TY - GEN
T1 - An attentional Unet with an auxiliary class learning to support acute ischemic stroke segmentation on CT
AU - Gómez, Santiago
AU - Florez, Sebastian
AU - Mantilla, Daniel
AU - Camacho, Paul
AU - Tarazona, Nick
AU - Martínez, Fabio
N1 - Publisher Copyright:
© 2023 SPIE.
PY - 2023
Y1 - 2023
N2 - Computed tomography (CT) is the first-line imaging modality for evaluation of patients suspected of stroke. Specially, such modality is key as screening test between ischemia and hemorrhage strokes. Despite remarkable support of encoder-decoder architectures, the delineation of ischemic lesions remains challenging on CT studies, reporting poor sensitivity, especially in the acute stage. Among others, these nets are affected because of the low scan quality, the challenging stroke geometry, and the variable textural representation. This work introduces a boundary-focused attention U-Net that takes advantage of cross-attention mechanism, that along multiple levels allows to recover stroke segmentation on CT scans. The proposed architecture is enriched with skip connections, that help in the recovering of saliency lesion maps and motivated the preservation of morphology. Besides, an auxiliary class is herein introduced with a weighted special loss function that remark lesion tissue, alleviating the negative impact of class unbalance. The proposed approach was validated on the public ISLES2018 dataset achieving an average dice score of 0.42 and a precision of 0.48.
AB - Computed tomography (CT) is the first-line imaging modality for evaluation of patients suspected of stroke. Specially, such modality is key as screening test between ischemia and hemorrhage strokes. Despite remarkable support of encoder-decoder architectures, the delineation of ischemic lesions remains challenging on CT studies, reporting poor sensitivity, especially in the acute stage. Among others, these nets are affected because of the low scan quality, the challenging stroke geometry, and the variable textural representation. This work introduces a boundary-focused attention U-Net that takes advantage of cross-attention mechanism, that along multiple levels allows to recover stroke segmentation on CT scans. The proposed architecture is enriched with skip connections, that help in the recovering of saliency lesion maps and motivated the preservation of morphology. Besides, an auxiliary class is herein introduced with a weighted special loss function that remark lesion tissue, alleviating the negative impact of class unbalance. The proposed approach was validated on the public ISLES2018 dataset achieving an average dice score of 0.42 and a precision of 0.48.
KW - Attention Deep Learning
KW - Computed Tomography
KW - Lesion Boundaries
KW - Medical Image Segmentation
KW - Stroke
UR - http://www.scopus.com/inward/record.url?scp=85159658519&partnerID=8YFLogxK
U2 - 10.1117/12.2654269
DO - 10.1117/12.2654269
M3 - Libros de Investigación
AN - SCOPUS:85159658519
T3 - Progress in Biomedical Optics and Imaging - Proceedings of SPIE
BT - Medical Imaging 2023
A2 - Colliot, Olivier
A2 - Isgum, Ivana
PB - SPIE
T2 - Medical Imaging 2023: Image Processing
Y2 - 19 February 2023 through 23 February 2023
ER -